{"id":17,"date":"2013-02-26T20:32:40","date_gmt":"2013-02-26T20:32:40","guid":{"rendered":"http:\/\/faculty.engineering.ucdavis.edu\/template\/?page_id=17"},"modified":"2014-02-27T00:33:19","modified_gmt":"2014-02-27T00:33:19","slug":"publications","status":"publish","type":"page","link":"https:\/\/faculty.engineering.ucdavis.edu\/aviran\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"<p><strong>Selected Recent Publications<\/strong><\/p>\n<p>Aviran S and Pachter L (2014) Rational experiment design for sequencing-based RNA structure mapping. submitted.<\/p>\n<p>Mortimer SA, Trapnell C*, Aviran S*, Pachter L, and Lucks JB (2012) SHAPE-Seq: high throughput RNA structure analysis. Current Protocols in Chemical Biology, 4, 275-299. (* Equal contribution)<strong><\/strong><\/p>\n<p>Aviran S, Trapnell C, Lucks JB, Mortimer SA, Luo S, Schroth GP, Doudna JA, Arkin AP, and Pachter L (2011) Modeling and automation of sequencing-based characterization of RNA structure. Proc. of the National Academy of Sciences (PNAS), 108, 11069-11074.<\/p>\n<p>Lucks JB, Mortimer SA, Trapnell C, Luo S, Aviran S, Schroth GP, Pachter L, Doudna JA, and Arkin AP (2011) Multiplexed RNA structure characterization with selective 2\u2032-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq). Proc. of the National Academy of Sciences (PNAS), 108, 11063-11068.<\/p>\n<p>Aviran S, Shah PS, Schaffer DV, and Arkin AP (2010) Computational models of HIV-1 resistance to gene therapy elucidate therapy design principles. PLoS Computational Biology, 6, e1000883.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Selected Recent Publications Aviran S and Pachter L (2014) Rational experiment design for sequencing-based RNA structure mapping. submitted. Mortimer SA, Trapnell C*, Aviran S*, Pachter L, and Lucks JB (2012) SHAPE-Seq: high throughput RNA structure analysis. Current Protocols in Chemical Biology, 4, 275-299. (* Equal contribution) Aviran S, Trapnell C, \u2026 <a class=\"continue-reading-link\" href=\"https:\/\/faculty.engineering.ucdavis.edu\/aviran\/publications\/\"> Continue reading <span class=\"meta-nav\">&rarr; <\/span><\/a><\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"template-twocolumns-left.php","meta":{"inline_featured_image":false,"ngg_post_thumbnail":0,"footnotes":""},"class_list":["post-17","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/aviran\/wp-json\/wp\/v2\/pages\/17","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/aviran\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/aviran\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/faculty.engineering.ucdavis.edu\/aviran\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/faculty.engineering.ucdavis.edu\/aviran\/wp-json\/wp\/v2\/comments?post=17"}],"version-history":[{"count":7,"href":"https:\/\/faculty.engineering.ucdavis.edu\/aviran\/wp-json\/wp\/v2\/pages\/17\/revisions"}],"predecessor-version":[{"id":52,"href":"https:\/\/faculty.engineering.ucdavis.edu\/aviran\/wp-json\/wp\/v2\/pages\/17\/revisions\/52"}],"wp:attachment":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/aviran\/wp-json\/wp\/v2\/media?parent=17"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}