{"id":17,"date":"2013-02-26T20:32:40","date_gmt":"2013-02-26T20:32:40","guid":{"rendered":"http:\/\/faculty.engineering.ucdavis.edu\/template\/?page_id=17"},"modified":"2013-06-28T18:55:25","modified_gmt":"2013-06-28T18:55:25","slug":"publications","status":"publish","type":"page","link":"https:\/\/faculty.engineering.ucdavis.edu\/saiz\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"<p>L. Saiz and J. M. G. Vilar, Protein-protein\/DNA interaction networks: versatile macromolecular structures for the control of gene expression, IET Systems Biology, 2, 247-255 (2008).<\/p>\n<p>L. Saiz and J. M. G. Vilar, Ab initio thermodynamic modeling of distal multisite transcription regulation, Nucleic Acids Research, 36, 726-731 (2008).<\/p>\n<p>L. Saiz and J.M.G. Vilar, Multilevel deconstruction of the\u00a0<em>in vivo<\/em>\u00a0behavior of looped DNA-protein complexes, PLoS One, 2(4): e355. doi:10.1371\/journal.pone.0000355 (2007).<\/p>\n<p>J.M.G. Vilar and L. Saiz, Multiprotein DNA looping, Phys. Rev. Lett., 96: 238103 (2006).<\/p>\n<p>L. Saiz and J.M.G. Vilar, DNA looping: the consequences and its control, Current Opinion in Structural Biology, 16: 344-350 (2006).<\/p>\n<p>L. Saiz and J.M.G. Vilar, Stochastic dynamics of macromolecular-assembly networks, Nature\/EMBO Molecular Systems Biology, 2, doi:10.1038\/msb4100061 (2006).<\/p>\n<p>S. Vemparala, L. Saiz, R.G. Eckenhoff, and M.L. Klein, Partitioning of anesthetics into a lipid bilayer and their interaction with membrane-bound peptide bundles, Biophys. J., 91: 2815-2825 (2006).<\/p>\n<p>L. Saiz, J.M. Rubi, and J.M.G. Vilar, Inferring the\u00a0<em>in vivo<\/em>\u00a0looping properties of DNA, Proc. Natl. Acad. Sci. USA, 102: 17642-17645 (2005).<\/p>\n<p>J.M.G. Vilar and L. Saiz, DNA looping in gene regulation: From the assembly of macromolecular complexes to the control of transcriptional noise, Current Opinion in Genetics &amp; Development, 15: 136-144 (2005).<\/p>\n<p>L. Saiz and M.L. Klein, The transmembrane domain of the acetylcholine receptor: Insights from simulations on synthetic peptide models, Biophys. J., 88: 959-970 (2005).<\/p>\n<p>M. Pickholz, L. Saiz, and M.L. Klein, Concentration effects of volatile anesthetics on the properties of model membranes: A coarse-grain approach, Biophys. J., 88: 1524-2534 (2005).<\/p>\n<p>L. Saiz and M.L. Klein, Computer simulation studies of model biological membranes, Acc. Chem. Res., 35: 482-489 (2002).<\/p>\n<p>L. Saiz and M.L. Klein, Influence of highly polyunsaturated lipid acyl chains of biomembranes on the NMR order parameters, J. Am. Chem. Soc., 123: 7381-7387 (2001).<\/p>\n<p>L. Saiz and M.L. Klein, Structural properties of a highly polyunsaturated lipid bilayer from molecular dynamics simulations, Biophys. J., 81: 204-216 (2001).<\/p>\n","protected":false},"excerpt":{"rendered":"<p>L. Saiz and J. M. G. Vilar, Protein-protein\/DNA interaction networks: versatile macromolecular structures for the control of gene expression, IET Systems Biology, 2, 247-255 (2008). L. Saiz and J. M. G. Vilar, Ab initio thermodynamic modeling of distal multisite transcription regulation, Nucleic Acids Research, 36, 726-731 (2008). L. Saiz and \u2026 <a class=\"continue-reading-link\" href=\"https:\/\/faculty.engineering.ucdavis.edu\/saiz\/publications\/\"> Continue reading <span class=\"meta-nav\">&rarr; <\/span><\/a><\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"template-twocolumns-left.php","meta":{"inline_featured_image":false,"ngg_post_thumbnail":0,"footnotes":""},"class_list":["post-17","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/saiz\/wp-json\/wp\/v2\/pages\/17","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/saiz\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/saiz\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/faculty.engineering.ucdavis.edu\/saiz\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/faculty.engineering.ucdavis.edu\/saiz\/wp-json\/wp\/v2\/comments?post=17"}],"version-history":[{"count":8,"href":"https:\/\/faculty.engineering.ucdavis.edu\/saiz\/wp-json\/wp\/v2\/pages\/17\/revisions"}],"predecessor-version":[{"id":226,"href":"https:\/\/faculty.engineering.ucdavis.edu\/saiz\/wp-json\/wp\/v2\/pages\/17\/revisions\/226"}],"wp:attachment":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/saiz\/wp-json\/wp\/v2\/media?parent=17"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}