{"id":17,"date":"2013-02-26T20:32:40","date_gmt":"2013-02-26T20:32:40","guid":{"rendered":"http:\/\/faculty.engineering.ucdavis.edu\/template\/?page_id=17"},"modified":"2021-07-06T00:44:59","modified_gmt":"2021-07-06T00:44:59","slug":"publications","status":"publish","type":"page","link":"https:\/\/faculty.engineering.ucdavis.edu\/sivasankar\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"
    \n
  1. Koirala, R., Priest, A., Yen, C.F., Cheah, J., Pannekoek, W.J., Gloerich, M., Yamada, S., Sivasankar, S.*, (2021<\/strong>)\u00a0 Inside-out regulation of E-cadherin conformation and adhesion,\u00a0 <\/a>Proceedings of the National Academy of Sciences of the United States of America<\/strong><\/em><\/a> (In Press).<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  2. Schmidt, P., Lajoie, J., Sivasankar, S.*, (2021<\/strong>)\u00a0 Robust scan synchronized force-fluorescence imaging,\u00a0 Ultramicroscopy<\/strong><\/em>, 221, 113165<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  3. Shafraz, O., Xie, B., Yamada, S., Sivasankar, S.*, (2020<\/strong>)\u00a0 Mapping transmembrane binding partners for E-cadherin ectodomains,\u00a0 Proceedings of the National Academy of Sciences of the United States of America<\/strong><\/em>, 117 (49) 31157-31165 <\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  4. Schmidt, P.D., Reichert, B.H., Lajoie, J.G., Sivasankar, S.*, (2020<\/strong>)\u00a0 Adaptive atomic force microscope,\u00a0 Proc. SPIE, Single Molecule Spectroscopy and Superresolution Imaging XIII<\/strong><\/em>, Article number: 1124604 <\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  5. Tavakoli, M., Jazani, S., Sgouralis, I., Shafraz, O., Donaphon, B., Sivasankar, S., Levitus, M., Press\u00e9, S., (2020<\/strong>)\u00a0Re-pitching single focus confocal data analysis one photon at a time with Bayesian nonparametrics,\u00a0 Physical Review X<\/strong><\/em>, 10, Article number: 011021<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  6. Priest, A.V.^, Koirala, R.^, Sivasankar, S.*, (2019<\/strong>)\u00a0Single molecule studies of classical and desmosomal cadherin adhesion,\u00a0 Current Opinion in Biomedical Engineering<\/strong><\/em>, 12, pages 43-50<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  7. Jazani, S., Sgouralis, I., Shafraz, O., Levitus, M., Sivasankar, S., Press\u00e9, S., (2019<\/strong>) An Alternative Framework for Fluorescence Correlation Spectroscopy, Nature Communications<\/em><\/strong>, 10, Article number:3662<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  8. Shafraz, O.^, R\u00fcbsam, M.^, Stahley, S., Caldara, A., Kowalczyk, A., Niessen, C., Sivasankar, S.*, (2018<\/strong>) E-cadherin binds to desmoglein to facilitate desmosome assembly, eLife<\/em><\/strong>, 7, e37629.<\/a><\/span>
    \n    \"Access<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  9. Schmidt, P., Reichert, B., Lajoie. J., Sivasankar, S.*, (2018<\/strong>) Method for high frequency tracking and sub-nm sample stabilization in single molecule fluorescence microscopy, Scientific Reports<\/em><\/strong>, 8, 13912.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  10. Yen, C.F., Sivasankar, S.*, (2018<\/strong>) Improving estimation of kinetic parameters in dynamic force spectroscopy using cluster analysis, The Journal of Chemical Physics<\/em><\/strong>, 148, 123301.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  11. Yen, C.F., Sivasankar, S.*, (2017<\/strong>) Minimizing open-loop piezo actuator nonlinearity artifacts in atomic force microscope measurements, Journal of Vacuum Science & Technology B<\/em><\/strong>, 35, 053201.<\/em><\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  12. Priest, A.V.^, Shafraz, O.^, Sivasankar, S.*, (2017<\/strong>) Biophysical basis of cadherin mediated cell-cell adhesion, Experimental Cell Research<\/em><\/strong>, 358, pp. 10-13.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  13. Manibog, K.^, Yen,C.F.^, Sivasankar, S.*, (2017<\/strong>) Measuring force induced dissociation kinetics of protein complexes using single molecule atomic force microscopy, Methods in Enzymology<\/em><\/strong>, 582, 297-320.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  14. Manibog, K., Sankar, K., Kim, S., Zhang, Y., Jernigan, R., Sivasankar, S.*, (2016<\/strong>) Molecular determinants of cadherin ideal bond formation: Conformation-dependent unbinding on a multidimensional landscape, Proceedings of the National Academy of Sciences of the United States of America<\/em><\/strong>, 113, no. 39, pp. E5711-E5720.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  15. Yen, C.F., Harishchandra, D., Kanthasamy, A., Sivasankar, S.*, (2016<\/strong>) Copper-induced structural conversion templates prion protein oligomerization and neurotoxicity, Science Advances<\/em><\/strong>, 2, 7, e1600014.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  16. Manibog, K., Li, H., Rakshit, S., Sivasankar, S.*, (2014<\/strong>) Resolving the molecular mechanism of cadherin catch bond formation, Nature Communications<\/em><\/strong>, 5, Article number:3941.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  17. Lowndes, M., Rakshit, S., Shafraz, O., Borghi, N., Harmond, R., Green, K., Sivasankar, S., Nelson, W.J., (2014<\/strong>) Distinguishing roles of different cadherins in the assembly and structural integrity of the desmosome complex, Journal of Cell Science<\/em><\/strong>,127, 2339-2350.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  18. Rakshit, S., Sivasankar, S.*, (2014<\/strong>) Biomechanics of cell adhesion: How force regulates the lifetime of adhesive bonds at the single molecule level, Physical Chemistry Chemical Physics<\/em><\/strong>, 16, 2211-2223.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  19. Sivasankar, S.*, (2013<\/strong>) Tuning the kinetics of cadherin adhesion, Journal of Investigative Dermatology<\/em><\/strong>, 133, 2318-2323.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  20. Rakshit, S., Zhang, Y.X., Manibog, K., Shafraz, O., Sivasankar, S.*, (2012<\/strong>) Ideal, catch and slip bonds in cadherin adhesion, Proceedings of the National Academy of Sciences of the United States of America<\/em><\/strong>, 109, 18815-18820.<\/a><\/span>
    \n    \"Access<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  21. Li, H.^, Yen, C.F.^, Sivasankar, S.*, (2012<\/strong>) Fluorescence Axial Localization with Nanometer Accuracy and Precision, Nano Letters<\/em><\/strong>, 12, 3731-3735.<\/a><\/span>
    \n    \"Access<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  22. Leckband, D., Sivasankar, S., (2012<\/strong>) Cadherin recognition and adhesion, Current Opinion in Cell Biology<\/em><\/strong>, 24, 1-8.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  23. Leckband, D., Sivasankar, S., (2012<\/strong>) Biophysics of cadherin adhesion, Springer: Sub-cellular Biochemistry<\/em><\/strong>, Volume: 60, Pages: 63-88.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  24. Choi, C.L., Li, H., Olson, A.C.K., Jain, P.K., Sivasankar, S.*, Alivisatos, A.P.*, (2011<\/strong>) Spatially indirect emission in a luminescent nanocrystal molecule, Nano Letters<\/em><\/strong>, 11, 2358-2362.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  25. Li, H., Fowler, N., Struck, C., Sivasankar, S.*, (2011<\/strong>) Flow triggered by instabilities at the contact-line of a drop containing nanoparticles, Soft Matter<\/em><\/strong>, 7, 5116-5119.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  26. Rakshit, S., Sivasankar, S.*, (2011<\/strong>) Cross-linking of a charged polysaccharide using polyions as electrostatic staples, Soft Matter<\/em><\/strong>, 7, 2348-2351.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  27. Choi, C.L., Koski, K.J., Sivasankar, S., Alivisatos, A.P., (2009<\/strong>) Strain-Dependent Photoluminescence Behavior of CdSe\/CdS Nanocrystals with Spherical, Linear, and Branched Topologies, Nano Letters<\/em><\/strong>, 9, 3544-3549.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  28. Sivasankar, S.^*, Zhang, Y.^, Nelson,W.J., and Chu, S.*, (2009<\/strong>) Characterizing the initial encounter complex in cadherin adhesion, Structure<\/em><\/strong>, 17, 1-7.<\/a><\/span>
    \n    (Selected for an editor\u2019s choice preview)<\/em><\/a><\/strong><\/span>
    \n\u00a0<\/span><\/li>\n
  29. Sivasankar, S.* and Chu, S., (2009<\/strong>) Nanoparticle mediated non-fluorescent bonding of microspheres to atomic force microscope cantilevers and imaging fluorescence from bonded cantilevers with single molecule sensitivity, Nano Letters<\/em><\/strong>, 9, 2120-2124.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  30. Zhang, Y.^, Sivasankar, S.^*, Nelson,W.J., and Chu, S.*, (2009<\/strong>) Resolving cadherin interactions and binding cooperativity at the single molecule level, Proceedings of the National Academy of Sciences of the United States of America<\/em><\/strong>, 106, 109-114.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  31. Sivasankar, S., and Chu, S., (2007<\/strong>) Optical bonding using silica nanoparticle sol-gel chemistry, Nano Letters<\/em><\/strong>, 7, 3031-3034.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  32. Sivasankar, S., Gumbiner, B., and Leckband, D., (2001<\/strong>) Direct measurements of multiple adhesive alignments and unbinding trajectories between cadherin extracellular domains, Biophysical Journal<\/em><\/strong>, 80, 1758-1768.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  33. Leckband, D., and Sivasankar, S., (2000<\/strong>) Mechanism of homophilic cadherin adhesion, Current Opinion in Cell Biology<\/em><\/strong>, 12, 587-592.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  34. Leckband, D., and Sivasankar, S., (1999<\/strong>) Forces controlling protein interactions: theory and experiment, Colloids and Surfaces B: Biointerfaces<\/em><\/strong>, 14, 83-97.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  35. Sivasankar, S., Brieher, W., Lavrik, N., Gumbiner, B., and Leckband, D., (1999<\/strong>) Direct molecular force measurements of multiple adhesive interactions between cadherin ectodomains, Proceedings of the National Academy of Sciences of the United States of America<\/em><\/strong>, 96, 11820-11824.<\/a><\/span>
    \n\u00a0<\/span><\/li>\n
  36. Sivasankar, S., Subramaniam, S., and Leckband, D., (1998<\/strong>) Direct molecular level measurements of the electrostatic properties of a protein surface, Proceedings of the National Academy of Sciences of the United States of America<\/em><\/strong>, 95, 12961-12966.<\/a><\/span><\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"

    Koirala, R., Priest, A., Yen, C.F., Cheah, J., Pannekoek, W.J., Gloerich, M., Yamada, S., Sivasankar, S.*, (2021)\u00a0 Inside-out regulation of E-cadherin conformation and adhesion,\u00a0 Proceedings of the National Academy of Sciences of the United States of America (In Press). \u00a0 Schmidt, P., Lajoie, J., Sivasankar, S.*, (2021)\u00a0 Robust scan synchronized \u2026 Continue reading → <\/span><\/a><\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","meta":{"inline_featured_image":false,"ngg_post_thumbnail":0,"footnotes":""},"class_list":["post-17","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/sivasankar\/wp-json\/wp\/v2\/pages\/17","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/sivasankar\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/sivasankar\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/faculty.engineering.ucdavis.edu\/sivasankar\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/faculty.engineering.ucdavis.edu\/sivasankar\/wp-json\/wp\/v2\/comments?post=17"}],"version-history":[{"count":9,"href":"https:\/\/faculty.engineering.ucdavis.edu\/sivasankar\/wp-json\/wp\/v2\/pages\/17\/revisions"}],"predecessor-version":[{"id":253,"href":"https:\/\/faculty.engineering.ucdavis.edu\/sivasankar\/wp-json\/wp\/v2\/pages\/17\/revisions\/253"}],"wp:attachment":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/sivasankar\/wp-json\/wp\/v2\/media?parent=17"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}