{"id":17,"date":"2013-02-26T20:32:40","date_gmt":"2013-02-26T20:32:40","guid":{"rendered":"http:\/\/faculty.engineering.ucdavis.edu\/template\/?page_id=17"},"modified":"2014-10-27T16:02:54","modified_gmt":"2014-10-27T16:02:54","slug":"publications","status":"publish","type":"page","link":"https:\/\/faculty.engineering.ucdavis.edu\/wuertz\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"<ul>\n<li>Cooney J.J. and S. Wuertz (1989). Toxic effects of tin compounds\u00a0on microorganisms. J. Ind. Microbiol. 4:375-402. (a review)<\/li>\n<li>Wuertz S., C.E. Miller, R.B. Pfister, and J.J. Cooney (1991).\u00a0TBT-resistant bacteria from estuarine and freshwater sediments. Appl.\u00a0Environ. Microbiol. 10:2783-2789.<\/li>\n<li>Wuertz S., M.E. Miller, M.M. Doolittle, J.F. Brennan, and J.J.\u00a0Cooney (1991). Butyltins in Boston Harbor sediments two years after tributyltin use was regulated. Chemosphere 22:1113-1120.<\/li>\n<li>Cooney J.J., M.E. Miller, S. Wuertz, and M.M. Doolitte (1991).\u00a0Action of tin compounds on microorganisms. In: Heavy metals in the environment. Vol.1 (Farmer J.G., ed.), pp.417-420, CEP Consultants\u00a0\u00a0Ltd., Edinburgh.<\/li>\n<li>Cooney J.J., S. Wuertz, M.M. Doolittle, M.E. Miller, K. Henry,\u00a0and D. Ricca (1993). Marine fungi: novel catalysts for bioremediation of oil spills. In: Trends in Microbial Ecology (Guerrero R. and\u00a0Pedros-Alio C., eds.), pp. 639-642.<\/li>\n<li>van der Lelie D., P. Corbisier, W. Bayens, S. Wuertz, L. Diels,\u00a0and M. Mergeay (1994). The use of biosensors for environmental\u00a0monitoring. Res. Microbiol. 145:67-74.<\/li>\n<li>Collard J.M., P. Corbisier, L. Diels, Q. Dong, C. Jenthon, M.\u00a0Mergeay, S. Taghavi. D. van der Lelie, A. Wilmotte, and S. Wuertz\u00a0\u00a0(1994). Plasmids for heavy metal resistance in Alcaligenes eutrophus\u00a0CH34: mechanisms and applications. FEMS Microbiol. Rev. 14:405-414.<\/li>\n<li>Cooney J.J., S. Wuertz, M.M. Doolittle, M.E. Miller, C.M.\u00a0Baisden, K.D. Henry and D.M. Ricca (1995). Marine fungi are potential\u00a0agents for bioremediation of oil spills. Biodet. Biodeg. 9: 610-614.<\/li>\n<li>Miller C.E., S. Wuertz, J.J. Cooney, and R.M. Pfister (1995).\u00a0Plasmids in tributyltin- resistant bacteria from fresh and estuarine\u00a0waters. J. Ind. Microbiol. 14:337-342.<\/li>\n<li>Wuertz S. and M. Mergeay (1997). Impact of heavy metals on soil\u00a0microbial communities and their activities. In: Modern Soil\u00a0Microbiology, p 607-642. Marcel Dekker, New York.<\/li>\n<li>Diels L., S. Wuertz, S. van Roy, M. Carpels, L. Hooyberghs, D.\u00a0Springael, S. Krebs, A. Ryngaert, and M. Mergeay (1997). Bioprozesse\u00a0zur R\u00fcckhaltung von Schwermetallen aus Wasser und Boden. In:\u00a0Mikrobieller Schadstoffabbau. S. 261-289. Vieweg Verlag\u00a0Braunschweig\/Wiesbaden.<\/li>\n<li>van der Lelie D., T. Schwuchow, U. Schwidetzky, S. Wuertz, W.\u00a0Baeyens, M. Mergeay, and D.H. Nies (1997). Two linked two-component\u00a0regulatory systems involved in regulation of heavy metal homeostasis in\u00a0Alcaligenes eutrophus CH34. Mol. Microbiol. 23:493-503.<\/li>\n<li>Griebe T., G. Schaule, and S. Wuertz (1997). Determination of microbial respiratory and redox activity in activated sludge. J. Ind.\u00a0Microbiol. Biotech. 19:118-122.<\/li>\n<li>Wuertz S., P. Pfleiderer, K. Kriebitzsch, T. Griebe, D.\u00a0Coello-Oviedo, R. Spaeth, P.A. Wilderer, and H.-C. Flemming (1998)\u00a0Extracellular redox activity in activated sludge. Water Sci. Technol.\u00a037 (4-5):379-384.<\/li>\n<li>Sp\u00e4th R., H.-C. Flemming, and S. Wuertz. (1998) Sorption\u00a0properties of biofilms. Water Sci. Technol. 37 (4-5):207-210.<\/li>\n<li>Huber S., S. Minnebusch, S. Wuertz, P.A. Wilderer, and B. Helmreich. (1998) Impact of different substrates on protein composition\u00a0in biomass during wastewater treatment investigated by two-dimensional electrophoresis. Water. Sci. Technol. 37 (4-5):363-366.<\/li>\n<li>Burtscher C., P.A. Fall, P.A. Wilderer, O. Christ, and S. Wuertz.\u00a0(1998) Detection and survival of pathogens during two-stage\u00a0thermophilic\/mesophilic anaerobic digestion of suspended organic waste.\u00a0Water Sci. Technol. 38 (12):123-126.<\/li>\n<li>Kriebitzsch K., E. Adamietz, C. Schiegl, B. Helmreich, P.A.\u00a0Wilderer, and S. Wuertz. (1998) Assessment of biological activity\u00a0during temperature changes in a bench-scale sequencing batch reactor\u00a0fed with synthetic medium containing lignin. Water Sci. Technol. 37\u00a0(4-5):251-254.<\/li>\n<li>Kuehn M., M. Hausner, H.-J. Bungartz, M. Wagner, P.A. Wilderer, and S. Wuertz. (1998). Automated confocal laser scanning microscopy and\u00a0\u00a0\u00a0\u00a0\u00a0 semiautomated image processing for the analysis of biofilms. Appl. Environ. Microbiol. 64:4115-4127.<\/li>\n<li>Burtscher C., P.A. Fall, P.A. Wilderer, and S. Wuertz. (1999).\u00a0Detection of Salmonella spp. and Listeria monocytogenes in suspended\u00a0organic waste by nucleic acid extraction and PCR. Appl. Environ. Microbiol. 65:2235-2237.<\/li>\n<li>Hausner M. and S. Wuertz. (1999). High rates of conjugation in\u00a0bacterial biofilms as determined by quantitative in situ analysis of\u00a0biovolumes. Appl. Environ. Microbiol. 65:3710-3713.<\/li>\n<li>Tibarzawa C., S. Wuertz, M. Mergeay, L. Wyns, and D. van der\u00a0Lelie. (2000). Regulation of the cnr cobalt and nickel resistance\u00a0determinant of Ralstonia eutropha (Alcaligenes eutrophus) CH34. J. Bacteriol. 182:1399-1409.<\/li>\n<li>Spaeth, R. and S. Wuertz. (2000). Extraction and quantification of extracellular polymeric substances from wastewaters. In: Biofilms.\u00a0Investigative methods &amp; applications, H.-C. Flemming, U. Szewzyk,\u00a0and T. Griebe (Eds.), Technomic Publishers, Lancaster, PA, USA, pp.\u00a051-68.<\/li>\n<li>Kuehn M., U. Schindler, P.A. Wilderer, and S. Wuertz. (2000).\u00a0Quantitative microscopy in biofilm studies. In: Biofilms. Investigative\u00a0methods &amp; applications, H.-C. Flemming, U. Szewzyk, and T. Griebe\u00a0(Eds.), Technomic Publishers, Lancaster, PA, USA, pp. 195-209.<\/li>\n<li>Wuertz S., E. M\u00fcller, Spaeth, R., P. Pfleiderer, and H.-C.\u00a0Flemming. (2000). Detection of heavy metals in bacterial biofilms and\u00a0microbial flocs with the fluorescent complexing agent Newport Green. J. Ind. Microbiol. Biotechnol. 24:116-123.<\/li>\n<li>Bungartz H.-J., M. Kuehn, M. Mehl, M. Hausner, and S. Wuertz.\u00a0(2000). Fluid flow, transport, and biomass growth in defined biofilms:\u00a0experiments and numerical simulations on a microscale. Water Sci.\u00a0Technol. 41 (4-5):331-338.<\/li>\n<li>Rodenacker K., A. Br\u00fchl, M. Hausner, M. K\u00fchn, V.\u00a0Liebscher, M. Wagner, G. Winkler, and S. Wuertz. (2000). Quantification\u00a0of biofilms in multispectral digital volumes from confocal laser\u00a0scanning microscopes. Image Anal. Stereol. 19:151-156.<\/li>\n<li>Hendrickx L., M. Hausner, and S. Wuertz. (2000). In situ monitoring of natural genetic transformation of Acinetobacter calcoaceticus BD413 in monoculture biofilms. Water Sci. Technol. 41\u00a0(4-5):155-158.<\/li>\n<li>Johnsen A.R., M. Hausner, A. Schnell, and S. Wuertz. (2000).\u00a0Evaluation of fluorescently labeled lectins for the localization of EPS\u00a0in Sphingomonas biofilms. Appl. Environ. Microbiol. 66: 3487-3491.<\/li>\n<li>Drewello U., R. Weissmann, S. R\u00f6lleke, E. M\u00fcller, S.\u00a0Wuertz, F. Fekrsanati, C. Troll, and R. Drewello. (2000). Biogenic\u00a0surface layers on historical window glass and the effect of excimer\u00a0laser cleaning. J. Cultural Heritage Suppl. 1: 161-171.<\/li>\n<li>M\u00fcller E., U. Drewello, R. Weissmann, and S. Wuertz. (2001).\u00a0In situ analysis of biofilms on historical window glass using confocal laser scanning microscopy. J. Cultural Heritage 2: 31-42.<\/li>\n<li>Wuertz S., L. Hendrickx, M. Kuehn, K. Rodenacker and M. Hausner.\u00a0(2001) In situ quantification of gene transfer in biofilms. Meth.\u00a0Enzymol. 336: 129-143.<\/li>\n<li>Kuehn M., M. Mehl, M. Hausner, H.-J. Bungartz, and S. Wuertz.\u00a0(2001). Time-resolved study of biofilm architecture and transport\u00a0processes using experimental and simulation techniques: the role of\u00a0EPS. Water Sci. Technol. 43(6): 143-151.<\/li>\n<li>Wuertz S., R. Spaeth, R., A. Hinderberger, T. Griebe, H.-C.\u00a0Flemming, and P.A. Wilderer. (2001). A new method for extraction of\u00a0extracellular polymeric substances from biofilms and activated sludge\u00a0suitable for direct quantification of sorbed metals. Water Sci.\u00a0Technol. 43 (6): 25-31.<\/li>\n<li>Xavier J.B., A. Schnell, S. Wuertz, R. Palmer, D.C. White, and\u00a0J.S. Almeida. (2001). Objective threshold selection procedure (OTS) for\u00a0segmentation of scanning scanning laser confocal microscopy images. J.\u00a0Microbiol. Method. 47:169-180.<\/li>\n<li>Falkentoft C.M., E. Muller, P. Arnz, P. Harremoes, H. Mosbaek, P.A. Wilderer, and S. Wuertz. (2002). Population changes in a biofilm\u00a0reactor for phosphorus removal as evidenced by the use of FISH. Water\u00a0Res. 36: 491-500.<\/li>\n<li>Nogueira R., L.F. Melo, U. Purkhold, S. Wuertz, and M. Wagner.\u00a0(2002). Microbial population dynamics versus nitrification performance\u00a0in biofilm reactors operated with different hydraulic retention times\u00a0during a shift from pure ammonia oxidation to combined organic carbon\u00a0and ammonia oxidation. Water Res. 36:469-481.<\/li>\n<li>Wilderer P.A., H.-J. Bungartz, H. Lemmer, M. Wagner, J. Keller,\u00a0and, S. Wuertz. (2002). Modern scientific methods and their potential\u00a0in wastewater science and technology. Water Res. 36:370-393.<\/li>\n<li>Pereira M.O., M. Kuehn, S. Wuertz, T. Neu, and L.F. Melo. (2002).\u00a0Effect of flow regime on the architecture of a Pseudomonas fluorescens\u00a0biofilm. Biotech. Bioeng. 78:164-171.<\/li>\n<li>Wuertz S. (2002). Gene exchange in biofilms. In: Encyclopedia of\u00a0\u00a0\u00a0\u00a0\u00a0 Environmental Microbiology, G. Bitton (ed.), John Wiley and Sons, New\u00a0York, NY. Vol. 3, p1408-1420.<\/li>\n<li>Muller E., K. Kriebitzsch, P.A. Wilderer, and S. Wuertz. (2002).\u00a0Community structure of micro-and macroflocs in pin-point sludge and the\u00a0influence of sludge age and potassium addition on microfloc formation.\u00a0Water Sci. Technol. 46 (1-2):405-412.<\/li>\n<li>Wattiau P., D. Springael, S.N. Agathos, and S. Wuertz. (2002) Use\u00a0of the pAL5000 replicon in PAH-degrading mycobacteria: application for\u00a0strain labeling and promoter probing. Appl. Microbiol. Biotechnol. 59:700-709.<\/li>\n<li>Bungartz H.-J., M. Kuehn, M. Mehl, and S. Wuertz. Space and time\u00a0resolved simulations of processes in biofilm systems on a microscale.\u00a0(2003) In: Polymer and cell dynamics &#8211; multiscale modeling and\u00a0numerical simulations, M. Chaplain, M. Griebel, J. Lenz, and W. Alt\u00a0(eds.), Birkh\u00e4user Verlag, Basel, pp. 175-188.<\/li>\n<li>Hendrickx L., M. Hausner, and S. Wuertz. (2003). Natural\u00a0transformation in monoculture Acinetobacter sp. BD413 biofilms. Appl.\u00a0Environ. Microbiol. 69:1721-1727.<\/li>\n<li>Rodrigues A.C., S. Wuertz, A.G. Brito, and L.F. Melo. (2003).\u00a0Three-dimensional distribution of a gfp-tagged Pseudomonas putida\u00a0during biofilm formation on solid PAHs assessed by confocal laser\u00a0scanning microscopy. Water Sci. Technol. 47(5), 139-142.<\/li>\n<li>Schmid M., A. Thill, U. Purkhold, M. Walcher, J.Y. Bottero, V.\u00a0Urbain, P. Ginestet, P. H. Nielsen, S. Wuertz, and M. Wagner. (2003). Characterization of activated sludge flocs by confocal laser scanning\u00a0microscopy and image analysis. Water Res. 37:2043-2052.<\/li>\n<li>Nancharaiah Y.V., P. Wattiau, S. Wuertz, S. Bathe, P. A.\u00a0Wilderer, and M. Hausner. (2003). Dual labeling of Pseudomonas putida\u00a0with fluorescent proteins for the in situ monitoring of conjugal\u00a0transfer of the TOL plasmid. Appl. Environ. Microbiol. 69:4846-4852.<\/li>\n<li>Burtscher C. and S. Wuertz. (2003). Evaluation of the use of PCR\u00a0and RT-PCR for detection of pathogenic bacteria in biosolids from\u00a0anaerobic digestors and aerobic composters. Appl. Environ. Microbiol.\u00a069:4618-4627.<\/li>\n<li>Lebuhn M., M. Effenberger, A. Gronauer, P.A. Wilderer, and S.\u00a0Wuertz. (2003). Using quantitative real time PCR to determine the\u00a0hygienic status of cattle manure. Water Sci. Technol. 48 (4):97-103.<\/li>\n<li>Schroeder E.D. and S. Wuertz. (2003). Bacteria. In: The handbook\u00a0of water and wastewater microbiology, D. Mara and N. Horan (eds.),\u00a0Elsevier, Amsterdam, p 57-68.<\/li>\n<li>Bathe, S., M. Lebuhn, J.W. Ellwart, S. Wuertz, and M. Hausner.\u00a0(2004). High phylogenetic diversity of transconjugants carrying plasmid\u00a0pJP4 in an activated sludge-derived microbial community. FEMS\u00a0Microbiol. Lett. 235:215-219.<\/li>\n<li>Bathe, S., T. V.K. Mohan, S. Wuertz, and M. Hausner. (2004).\u00a0Bioaugmentation of a sequencing batch biofilm reactor by horizontal\u00a0gene transfer. Water Sci. Technol. 49(11-12):337-344.<\/li>\n<li>Wuertz, S., S. Okabe, and M. Hausner. (2004). Microbial\u00a0communities and their interactions in biofilm systems: an overview.\u00a0Water Sci. Technol. 49 (11-12):327-336.<\/li>\n<li>Hendrickx, L. and S. Wuertz. (2004). Investigating in situ\u00a0natural genetic transformation of Acinetobacter sp. BD413 in biofilms\u00a0using confocal laser scanning microscopy. J. Setlow, A. Hollender\u00a0(eds.) In: Genetic Engineering, Principles and Methods, Vol. 27, p 159-174. Plenum Press, New York.<\/li>\n<li>Pozos N., K. Scow, S. Wuertz, and J. Darby. (2004). UV\u00a0disinfection in a model distribution system: biofilm growth and\u00a0microbial community. Water Res. 38:3083-3091.<\/li>\n<li>Nancharaiah Y.V., V. P. Venugopalan, S. Wuertz, P. A. Wilderer, and M. Hausner. (2005). Compatibility of the green fluorescent protein\u00a0and a general nucleic acid stain for quantitative description of a\u00a0Pseudomonas putida biofilm. J. Microbiol. Meth. 60: 179-187.<\/li>\n<li>Rodrigues A.C., S. Wuertz, A.G. Brito, and L.F. Melo. (2005).\u00a0Fluorene and phenanthrene uptake by Pseudomonas putida ATCC 17514: kinetics and physiological aspects. Biotechnol. Bioeng. 90:281-289.<\/li>\n<li>Venugopalan V. P., M. Kuehn, M. Hausner, D. Springael, P. A.\u00a0Wilderer, and S. Wuertz. (2005). Architecture of a nascent Sphingomonas\u00a0sp. biofilm under varied hydrodynamic conditions. Appl. Environ.\u00a0Microbiol. 71:2677-2686.<\/li>\n<li>Sorensen S.J., M. Bailey, L.H. Hansen, N. Kroer, and S. Wuertz.\u00a0Studying plasmid horizontal transfer in situ: a critical review. Nat. Microbiol. Rev. 3:700-710.<\/li>\n<li>GrayMerod\u00a0R., L. Hendrickx, L. N. Mueller, J.\u00a0B. Xavier, and S. Wuertz. (2005). Effect of nucleic acid stain Syto 9\u00a0on\u00a0nascent biofilm architecture of <i>Acinetobacter\u00a0<\/i>sp. BD413. Water Sci. Technol. 52(7):195-202.<\/li>\n<li>Thompson D.E., V.B. Rajal, S.\u00a0 De Batz, and S. Wuertz. (2006).\u00a0Detection of <i>Salmonella <\/i>spp. in water\u00a0using magnetic bead capture hybridization combined with PCR or\u00a0real-time\u00a0PCR.\u00a0 J. Water Health 4: 67-75.<\/li>\n<li>van Herwijnen, R., B. Joffe, A.\u00a0Ryngaert, N. M. Leys, M. Hausner, D. Springael, H.A.J. Govers, S. Wuertz, and J.R. Parsons. (2006). Effect of bioaugmentation and supplementary carbon sources on\u00a0degradation\u00a0of PAHs by a soil derived culture. FEMS\u00a0Microbiology Letters 55: 122-135.<\/li>\n<li>Falk, M. W. and S. Wuertz. (2006). Diversity of\u00a0biofilms and their formation processes. In: Biodiversity in\u00a0Agricultural\u00a0Production Systems, p 131 \u2013 148, G. Benckiser and S. Schnell (eds.),\u00a0CRC Press,\u00a0Taylor and Francis Group, Boca Raton, 2006.<\/li>\n<li>Rajal, V. B., B. S. McSwain, D.E. Thompson, C.\u00a0M. Leutenegger, B. Kildare, and S. Wuertz. (2007) Validation of hollow\u00a0fiber\u00a0ultrafiltration and real time PCR using bacteriophage PP7 as surrogate\u00a0for the\u00a0quantification of viruses from water samples.\u00a0Water Res. 41:1411-1422<\/li>\n<li>Rajal, V.B., B. S. McSwain, D.E. Thompson, C.\u00a0M. Leutenegger, and S. Wuertz. (2007). Molecular quantitative analysis\u00a0of human\u00a0viruses in California\u00a0storm water. Water Res. 41:4287-4298.<\/li>\n<li>Merod,\u00a0R.T., J. E. Warren, H. McCaslin, and S. Wuertz.\u00a0(2007) Toward automated analysis of biofilm architecture: bias caused\u00a0by extraneous\u00a0\u00a0CLSM images. Appl. Environ. Microbiol. 73:4922-4930.<\/li>\n<li>Santo Domingo, J.W., Bambic, D.G., Edge, T.A. and Wuertz,\u00a0S. (2007) \u00a0Quo vadis source tracking?\u00a0Towards a strategic framework for environmental monitoring of fecal\u00a0pollution. Water Res.41:\u00a03539-3552.<\/li>\n<li>Kildare,\u00a0\u00a0B.J.,\u00a0Leutenegger, C.M., McSwain, B.S., Bambic, D.G., Rajal, V.B. and Wuertz,\u00a0S. (2007) 16S rRNA-based assays for quantitative detection of universal, human-,\u00a0cow-and\u00a0dog-specific fecal <i>Bacteroidales<\/i>: a Bayesian approach. Water Res. 41:3701-3715.<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Cooney J.J. and S. Wuertz (1989). Toxic effects of tin compounds\u00a0on microorganisms. J. Ind. Microbiol. 4:375-402. (a review) Wuertz S., C.E. Miller, R.B. Pfister, and J.J. Cooney (1991).\u00a0TBT-resistant bacteria from estuarine and freshwater sediments. Appl.\u00a0Environ. Microbiol. 10:2783-2789. Wuertz S., M.E. Miller, M.M. Doolittle, J.F. Brennan, and J.J.\u00a0Cooney (1991). Butyltins in \u2026 <a class=\"continue-reading-link\" href=\"https:\/\/faculty.engineering.ucdavis.edu\/wuertz\/publications\/\"> Continue reading <span class=\"meta-nav\">&rarr; <\/span><\/a><\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"template-twocolumns-left.php","meta":{"inline_featured_image":false,"ngg_post_thumbnail":0,"footnotes":""},"class_list":["post-17","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/wuertz\/wp-json\/wp\/v2\/pages\/17","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/wuertz\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/wuertz\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/faculty.engineering.ucdavis.edu\/wuertz\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/faculty.engineering.ucdavis.edu\/wuertz\/wp-json\/wp\/v2\/comments?post=17"}],"version-history":[{"count":9,"href":"https:\/\/faculty.engineering.ucdavis.edu\/wuertz\/wp-json\/wp\/v2\/pages\/17\/revisions"}],"predecessor-version":[{"id":249,"href":"https:\/\/faculty.engineering.ucdavis.edu\/wuertz\/wp-json\/wp\/v2\/pages\/17\/revisions\/249"}],"wp:attachment":[{"href":"https:\/\/faculty.engineering.ucdavis.edu\/wuertz\/wp-json\/wp\/v2\/media?parent=17"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}