Ureolytic Calcite Precipitiation
 DeJong, J. T., B. C. Martinez, T. R. Ginn, C. Hunt, D. Major, and B. Tanyu, Development of a scaled repeated fivespot treatment model for examining microbial induced calcite precipitation feasibility in field applications, Geotechnical Testing Journal 37(3), 2014.
 Martinez, B. C., J. T. DeJong, T. R. Ginn, Biogeochemical reactive transport modeling of microbial induced calcite precipitation to predict the treatment of sand in onedimensional flow, Computers and Geotechnics, 58:113, 2014.
 Martinez, B. C., J. T. DeJong, T. R. Ginn, B. Montoya, T. H. Barkouki, C. Hunt, B. Tanyu, and D. Major, Experimental optimization of microbialinduced carbonate precipitation for soil improvement, J. Geotechnical and Geoenv. Eng. 139(4):587598, 2013.
 Barkouki, T.H., Martinez, B.C., Mortensen, B.M., Weathers, T.S., De Jong, J.D., Ginn, T.R., Spycher, N.F., Smith, R.W., Fujita, Y., Forward and Inverse BioGeochemical Modeling of Microbially Induced Calcite Precipitation in HalfMeter Column Experiments, Transport in Porous Media, 90(1):2339, 2011.
 Martinez, B.C., Barkouki, T.H., Dejong, J.D., Ginn, T.R., Upscaling of microbial induced calcite precipitation in 0.5m columns: Experimental and modeling results, Geotechnical Special Publication, (211 GSP), pp. 40494059, 2011.
 DeJong, J.T., Soga, K., Banwart, S.A., Whalley, W.R., Ginn, T.R., Nelson, D.C., Mortensen, B.M., Martinez, B.C., Barkouki, T., Soil engineering in vivo: Harnessing natural biogeochemical systems for sustainable, multifunctional engineering solutions, J. Royal Society Interface, 8(54):115, 2011.
Colloid / Bacterial Transport and Horizontal Gene Transfer

Lu, N., A. Massoudieh, X. Liang, T. Kamai, J.L. Zilles, T.H. Nguyen, T.R. Ginn, A kinetic model of gene transfer via natural transformation of Azotobacter vinelandii, Environmental Science: Water Research & Technology, published online 12 March 2015.
 Massoudieh A., N. Lu, X. Liang, T. H. Nguyen, T. R. Ginn, Bayesian processidentification in bacteria transport in porous media, J. Contaminant Hydrol., 153, 7891, 2013.
 Nelson K. E., T. R. Ginn, T. Kamai, Comment on “Extending applicability of correlation equations to predict colloidal retention in porous media at low fluid velocity,” Environ Sci Technol., 47(14):80789, 2013.
 Nelson, K.E., Ginn, T.R., New collector efficiency equation for colloid filtration in both natural and engineered flow conditions, Water Resour. Res. 47(5) Art. No. W05543, 2011.
 Massoudieh, A., C. Crain, E. Lambertini, K. E. Nelson, T. Barkouki, P. L’Amoreaux, F. J. Loge, T. R. Ginn, Kinetics of conjugative gene transfer among bacteria attached to surfaces in granular porous media, J Contaminant Hydrol.,112(14): 91102, 2010.
 Nelson, K. E. and T. R. Ginn, Comment on Particle Tracking Model for Colloid Transport near Planar Surfaces Covered with Spherical Asperities, Langmuir 25(21) : 1283512836, 2009.
 Massoudieh A. and T. R. Ginn, Modeling ColloidEnhanced Contaminant Transport in Stormwater Infiltration Basin Best Management Practices, Vadose Zone J., 7(4): 12151222, 2008.
 Loge F. J., E. Lambertini, M. A.Borchardt, H. Basagaoglu, and T. R. Ginn, Effects of Etiological Agent and Bather Shedding of Pathogens on Interpretation of Epidemiological Data Used to Establish Recreational Water Quality Standards, Risk Analysis, 29(2): 257266 2009.
 Basagaoglu H., P. Meakin, S. Succi, G. R. Redden, T. R. Ginn, Twodimensional lattice Boltzmann simulation of colloid migration in roughwalled narrow flow channels, Phys. Rev. E, 77(3), 2008.
 Massoudieh A., A. Mathew, E. Lambertini, K. E. Nelson, T. R. Ginn, Horizontal gene transfer on surfaces in natural porous media: Conjugation and kinetics, Vadose Zone Journal 6(2): 306315, 2007.
 Massoudieh A. and T. R. Ginn, Modeling colloidfacilitated transport of multispecies contaminants in unsaturated porous media, Journal of Contaminant Hydrology, 92(34):162183, 2007.
 Nelson K. E., A. Massoudieh A, T. R. Ginn, E. coli fate and transport in the Happel sphereincell model, Advances in Water Resources 30(67): 14921504, 2007.
 Ginn T. R., T. Camesano, T. D. Scheibe, K. E. Nelson, T. P. Clement, B. D. Wood, Microbial Transport in the Subsurface, Encyclopedia of Hydrological Sciences, Edited by D. McKnight, John Wiley & Sons Publishing, New York, NY, 2006.
 Nelson, K. E. and T. R. Ginn, Colloid filtration theory and the Happel sphereincell model revisited with direct numerical simulation, Langmuir, 21(6); 21732184, 2005, DOI: 10.1021/la048404i.
 Ginn, T. R., B. D. Wood, K. Nelson, T. D. Scheibe, E. M. Murphy, and T. P. Clement, Processes in Microbial Transport in the Natural Subsurface, Advances in Water Research,25(812):10171042, 2002.
 Ginn, T. R., A traveltime approach to effects of size exclusion on colloid transport in porous media, 10.1029/2001WR000865, Water Resour. Res., 2002.
 Nelson, K. E., and T. R. Ginn, Theoretical investigation of bacterial chemotaxis in porous media, Langmuir, 17:56355645, 2001.
 Murphy, E. M. and T. R. Ginn. Modeling microbial processes in porous media, Hydrogeology J., 8(1):142158, 2000.
 DeFlaun M.F., C.J. Murray, W. Holben, T. Scheibe, A. Mills, T. R. Ginn, T. Griffin, E. Majer, and J.L. Wilson. Preliminary observations on bacterial transport in a coastal plain aquifer. 20:473487, FEMS Microbiological Reviews, 1997.
Multiredox biogeochemical kinetics, microbial growth, toxicity, and metal reduction/reoxidation
 Singh, G., S. S. Sengör, A. Bhalla, S. Kumar, J. De, B. Stewart, N. Spycher, T. R. Ginn, B. M. Peyton, R. Sani, Reoxidation of biogenic reduced uranium: A challenge toward bioremediation, Critical Reviews in Environmental Science and Technology, 44:391415, 2014.
 Sengör, S. S., T. R. Ginn, C. J. Brugato, P. Gikas, Anaerobic microbial growth near thermodynamic equilibrium as a function of ATP/ADP cycle: The effect of maintenance energy requirements, Biochemical Engineering J., 81:56572, 2013.
 Sengör, S.S., Gikas, P., Moberly, J. G., Peyton, B. M., Ginn, T. R., Comparison of single and joint effects of Zn and Cu in continuous flow and batch reactors, J. Chemical Tech. & Biotech. 87(3):374380, 2012.
 Spycher, N.F., Issarangkun, M., Stewart, B.D., Sengör, S. S., Belding, E., Ginn, T.R., Peyton, B.M., Sani, R.K., Biogenic uraninite precipitation and its reoxidation by iron(III) (hydr)oxides: A reaction modeling approach, Geochimica et Cosmochimica Acta, 75 (16), pp. 44264440, 2011.
 Sani, R.K., Rastogi, G., Moberly, J.G., Dohnalkova, A., Ginn, T.R., Spycher, N., Shende, R.V., Peyton, B.M., The toxicity of lead to Desulfovibrio desulfuricans G20 in the presence of goethite and quartz, J. Basic Microbiology, 50(2):60170, 2010.
 Moberly, J. G., T. Borch, R. K. Sani, N. F. Spycher, S. S. Sengor, T. R. Ginn, B. M. Peyton, Heavy MetalMineral Associations in Coeur d’Alene River Sediments: A SynchrotronBased Analysis, Water Air and Soil Pollution, 201(14):195208 July 2009.
 Rastogi, G., R.K. Sani, B. M. Peyton, J. Moberly, T. R Ginn, Molecular Studies on the Microbial Diversity Associated with MiningImpacted Lake Coeur d’ Alene Sediments, Microbial Ecology, 58(1):129139 July 2009.
 Sengor, SS, Barua S, Gikas P, Ginn TR, Peyton BM, Sani R, Spycher N, Influence of Heavy Metals on Microbial Growth Kinetics Including Lag Time: Mathematical Modeling and Experimental Verification, Environmental Toxicology and Chemistry, 28(10):20202029, 2009.
 Gikas, P., Sengör, S.S., Ginn, T., Moberly, J., Peyton, B., The effects of heavy metals and temperature on microbial growth and lag, Global Nest Journal, 11(3), pp. 325332, 2009.
 Sengor, S. S., N. Spycher, T. R. Ginn, R. K. Sani, B. Peyton, Biogeochemical reactivediffusive transport of heavy metals in Lake Coeur d’Alene sediments, Applied Geochemistry, 22(12): 25692594, 2007.
 Wood, B.D., T.R. Ginn, and C. N. Dawson. Effects of Microbial Lag in Contaminant Transport and Biodegradation Modeling. Water Resources Research, 31:553563, 1995.
Inverse Problems
 Nassar, M. and T. R. Ginn, Impact of numerical artifact of the forward model in the inverse solution of densitydependent flow problem, Water Resources Research, 50, doi:10.1002/2013WR014672, 2014.
 Nassar, M. and T. R. Ginn, Cauchy data requirement of the inverse problem of the mean age equation, Water Resources Research 50(4):35833588, 2014.
 Giudici, M., T. R. Ginn, C. Vassena, H. Haeri, L. Foglia, J.C. Refsgaard, K. Kovar, E. Haarder, E. Nygaard, A critical review of the properties of forward and inverse problems in groundwater hydrology, Proceedings of an International Conference on Calibration and Reliability in Groundwater Modelling: Credibility of Modelling, Copenhagen, Denmark, 913 September 2007.
 Massoudieh A., A. Mathew, T. R. Ginn, Column and batch reactive transport experiment parameter estimation using a genetic algorithm, Computers & Geosciences, 34(1):2434, 2008.
 Ginn, T. R., and J. H. Cushman. A Continuous – Time Inverse Operator for Groundwater and Contaminant Transport Modeling: II, Model Identifiability. Water Resources Research, 28:539549, 1992.
 Ginn, T. R., J. H. Cushman, and M. H. Houck. A Continuous – Time Inverse Operator for Groundwater and Contaminant Transport Modeling I, Deterministic Case, Water Resour. Res., 26:241252, 1990.
 Ginn, T. R., and J. H. Cushman, Inverse methods for subsurface flow a critical review of stochastic techniques, Stoch. Hydrology and Hydraulics 4(1):126, 1990.
 Ginn, T. R., and M. H. Houck. 1989. Calibration of an Objective Function for Optimization of RealTime Reservoir Operations. Water Resources Research, 25:591604, 1989.
Groundwater Age
 Marçais, J., J.R. de Dreuzy, T. R. Ginn, P. RousseauGueutind, S. Leray, Inferring transit time distributions from atmospheric tracer data: Assessment of the predictive capacities of Lumped Parameter Models on a 3D crystalline aquifer model, J. Hydrology, 525:619–631, 2015.
 McCallum, J., N. B. Engdahl, T. R. Ginn, P. G. Cook, Nonparametric estimation of groundwater residence time distributions: What can environmental tracer data tell us about groundwater residence time? Water Resour. Res. 50(3):20222038, 2014.
 Engdahl, N.B., T. R. Ginn, G. E. Fogg, Using groundwater age distributions to estimate the effective parameters of Fickian and nonFickian models of solute transport, Adv. in Water Resour. 54:1121, 2013.
 Engdahl, N. E., T. R. Ginn, G. E. Fogg, NonFickian dispersion of groundwater age, Water Resour. Res. 48(7), Art. W07508, 2012.
 Massoudieh, A., Ginn, T. R., The theoretical relation between unstable solutes and groundwater age, Water Resour. Res. 47, Art. 10523, 2011.
 Ginn, T. R., H. Haeri, L. Foglia, and A. Massoudieh, Notes on groundwater age in forward and inverse modeling, Transport in Porous Media,79:117134, 2009.
 Woolfenden L.and T.R. Ginn. Modeled Groundwater Age Distributions. Ground Water, 47(4): 547557, 2009.
 Ginn, T. R., Comment on “Groundwater age, life expectancy, and transit time distributions in advectivedispersive systems: 1. Generalized reservoir theory,” by F. Cornaton and P. Perrochet, Adv. Water Resour., 30(4): 10561057, 2007.
 Ginn, T.R. On the distribution of generalized exposuretime in groundwater flow and reactive transport: Foundations; formulations for groundwater age, geochemical heterogeneity, and biodegradation, Water Resour. Res., 35(5):13951408, 1999.
Theory and upscaling of reactive transport / bioremediation
 Le Borgne, T., T. R. Ginn, and M. Dentz, Impact of fluid deformation on mixinginduced chemical reactions in heterogeneous flows, Geophysical Research Letters, 41(22):7898–7906, 2014.
 Engdahl, N.B., T. R. Ginn, G. E. Fogg, Scalar dissipation rates in nonconservative transport systems, J. of Contam. Hydrol., 149C:4660, 2013.
 Ginn, T. R., M. K. Nassar, T. Kamai, K. Klise, V. Tidwell, and S. McKenna, On a recent solute transport laboratory experiment involving sandstone and its modeling, Water Resour. Res. 49(11):73277338, 2013.
 Ginn, T. R., Comment on “Comparison of Fickian and temporally nonlocal transport theories over many scales in an exhaustively sampled sandstone slab” by E. D. Major et al., Water Resour. Res. 49(2):11951195, 2013.
 Ginn, TR, Generalization of the Multirate Basis for TimeConvolution to Unequal Forward and Reverse Rates and Connection to Reactions with Memory, Water Resour. Res. 45, Art. W12419, 2009.
 Seeboonruang, U., and T. R. Ginn, Upscaling heterogeneity in aquifer reactivity via exposuretime concept: forward model, J. Contam. Hydrol., 84 (34): 127154, 2006.
 Seeboonruang, U., and T. R. Ginn, Upscaling heterogeneity in aquifer reactivity via exposuretime concept: inverse model, J. Contam. Hydrol., 84(34): 155177, 2006.
 Ginn, T. R., On the application of stochastic approaches in hydrogeology, Stochastic Environmental Research and Risk Assessment, 18(4): 282284, 2004.
 Ginn, T. R., Streamtubeensemble techniques for nonlinear multicomponent reactive transport in heterogeneous media, in R. Govindaraju (ed.) Stochastic Methods in Subsurface Contaminant Hydrology, ASCE Press, 2003.
 Ginn, T. R. Stochasticconvective transport with nonlinear reactions and mixing: Finite streamtube ensemble formulation for multicomponent reaction systems with intrastreamtube dispersion, J. Contam. Hydrol., 47:128, 2001.
 Cushman, J. H. and T. R. Ginn, The fractional ADE is a classical mass balance with convoutionfickian flux, Water Resour. Res. 36(12):37633766, 2000.
 Ginn, T.R. On the distribution of multicomponent mixtures over generalized exposuretime in subsurface flow and reactive transport: Theory and formulations for residencetime dependent sorption/desorption with memory, Water Resour. Res. 36:28852894, 2000.
 Ginn, T.R. On the distribution of multicomponent mixtures over generalized exposuretime in subsurface flow and reactive transport: Batch and column applications involving residencetime distributions and nonMarkovian reaction kinetics, Water Resour. Res. 36:28952904, 2000.
 LaViolette, R. A., M. E. Watwood, T. R. Ginn, and D. L. Stoner, Spatial disorder and degradation kinetics in intrinsic biodegradation schemes, J. Physical Chem A, 103(23): 44804484, 1999.
 Ginn, T. R., and E. M. Murphy. Generalized chloride mass balance: Forward and inverse solutions for 1dimensional tracer convection under transient flux, Water Resour. Res. 33:2065 2080, 1997.
 Simmons, C. S., T. R. Ginn, and B. D. Wood. StochasticConvective Transport with Nonlinear Reaction: 1, Mathematical Framework. Water Resources Res., 31:26752688, 1995.
 Ginn, T. R., C. S. Simmons, and B. D. Wood. StochasticConvective Transport with Nonlinear Reaction: 2, Biodegradation with Microbial Growth. Water Resour. Res. 31:26892700, 1995.
 Chilakapati A, Ginn T, Szecsody J. An analysis of complex reaction networks in groundwater modeling Water Resour. Res., 34 (7): 17671780, 1998.
 Cushman, J.H., X. Hu, and T.R. Ginn. Nonequilibrium Statistical Mechanics of Preasymptotic Dispersion. J. Statistical Physics, 75:859878, 1994.
 Cushman, J.H. and T.R. Ginn. NonLocal Dispersion in Media with Continuously Evolving Scales of Heterogeneity. Transport in Porous Media, 13:123138, 1993.
 Cushman, J.H. and T.R. Ginn. On Dispersion in Fractal Porous Media. Water Resources Research, 29:35133515, 1993.
 Cosby, B. J., R. B. Clapp, G. M. Hornberger, and T. R. Ginn. A Statistical Exploration into the Relationships of Soil Moisture Characteristics to the Physical Properties of Soils. Water Resources Res., 20:682690, 1984.
Applied reactive transport in porous media/ remediation technology
 Sutton, P. T. and T. R. Ginn, Sustainable inwell vapor stripping: A design, analytical model, and pilot study for groundwater remediation, J. of Contam. Hydrol., 171:3241, 2014.
 Boutros, F. E., Y. S. Onsoy, T. R. Ginn, T. H. Harter, Richards equationbased modeling to estimate flow and nitrate transport in a deep alluvial vadose zone, Vadose Zone J., 11(4), 2012.
 Massoudieh, A., Bombardelli, FA, Ginn, TR, A biogeochemical model of contaminant fate and transport in river waters and Sediments, J Contaminant Hydrol., 112(14),103117, 2010.
 Massoudieh A, Zagar D, Green PG, CabreraToledo C, Horvat M, Ginn TR, Barkouki, T, Weathers, T, Bombardelli FA, Modeling Mercury Fate and Transport in Aquatic Systems in Advances in Environmental Fluid Mechanics, edited by Igor Balaz, Carlo Gualtieri and Dragutin Mihailovic, World Scientific, New York, 2010.
 Joyce B. A., W. W. Wallender, T. R. Ginn, Modeling the transport of sprayapplied pesticides from fields with vegetative cover, Transactions of the ASABE, 51(6): 19631976, 2008.
 Massoudieh A. D, Ju, T. Young, T. R. Ginn, Approximation of a radial diffusion model with a multiplerate model for heterodisperse particle mixtures, J. Contaminant Hydrol., 97(12): 5566, 2008.
 Bendz, D., N. A. Paxeus, T. R. Ginn, F. J. Loge, Occurrence and fate of pharmaceutically active compounds in the environment, a case study: Höje River in Sweden: Journal of Hazardous Materials, 21 April 2005 122: 195204.
 Onsoy, Y., T. H. Harter, T. R. Ginn, W. Horwath, Spatial variability and transport of nitrate in a deep alluvial unsaturated zone, Vadose Zone J., 2005 4: 4154.
 Nakajima, H., B. Kutter, T.R. Ginn, M. A. Marino, An experimental study of LNAPL lens formation using a centrifuge, Proc. 16th Intl. Conf. Soil Mechanics and Geotechnical Engineering., 2005, 1216 September in Osaka, Japan.
 Ruppe, L. M. and T. R. Ginn, Groundwater Quality, in Encyclopedia of Water Science, pages 389391, July 28, 2003, DOI 10.1081/EEWS120010304.
 Basagaoglu H., T. R. Ginn, and B. J. McCoy, Radial pore diffusion with nonuniform intraparticle porosities, ASCE Journal of Environmental Engineering, 130(10): 11701179, 2004.
 Basagaoglu H., E. E. Chung, D. Gandhi, K. M. Scow, B. J. McCoy, T. R. Ginn, Rate parameters for MTBE degradation via a radial diffusion model, ASCE J. of Env. Engineering, 129(6):565570, 2003.
 Basagaoglu, H., McCoy, B.J., Ginn, T. R., Loge, F.J., and Dietrich, J.P. A Diffusion Limited Sorption Kinetics Model Involving Multiple Identical or NonIdentical Particles, Adv. in Water Resour. 25(7):755772, 2002.
 Basagaoglu H., E. E. Chung, D. Gandhi, K. M. Scow, B. J. McCoy, T. R. Ginn, Rate parameters for MTBE degradation via a radial diffusion model, Journal of Environmental Engineering., 129(6):565570, 2003.
 Basagaoglu, H., T. R. Ginn, B. J. McCoy, Formulation of a soilpesticide transport model based on a compartmental approach, J. Contaminant Hydrol., 56: 124, 2002.
 Basagaoglu, H., T. R. Ginn, B. J. McCoy, Comment on “Model coupling intra particle diffusion/sorption, nonlinear sorption, and biodegradatin process” by HK Karapanagioti, CM Gossard, KA Strevett, RL Kolar, and DA Sabatini, J. Contaminant Hydrol., 57: 303310 2002.
 Basagaoglu, H., T. R. Ginn, C. T. Green, and B. J. McCoy, Transport in heterogeneous media: Tracer dynamics in complex flow networks, 48:11221132. American Institute of Chemical Engineers Journal , 2002.
 Ginn, T. R., E. M. Murphy, A. Chilakapati, U. Seeboonruang, Stochasticconvective transport with nonlinear reactions and mixing: Application to intermediatescale experiments in aerobic biodegradation in saturated porous media, J. Contaminant Hydrol., 48:121149, 2001.
 Basagaoglu, H., T. R. Ginn, B. J. McCoy, M. A. Marino, A linear driving force approximation to a radial diffusive model, Am. Inst. Chem. Eng. J., 46(10):20972105, 2000.
 Murphy, E. M., T. R. Ginn, A. Chilakapati, T. Resch, J. Phillips, T. Wietsma, and C. M. Spadoni. The Influence of Physical Heterogeneity on Microbial Degradation and Distribution in Porous Media, Water Resources Res., 33:10871104, 1997.
 Murphy, E. M., T. R. Ginn, and J. L. Phillips. Geochemical estimates of recharge in the Pasco Basin: Evaluation of the chloride massbalance technique, Water Resour. Res. 32:28532868, 1996.
Water Disinfection
 Camarillo, M.K., Loge, F.J., Darby, J.L., Ginn, T.R., Basagaoglu, H., Foglia, L., Modeling the inactivation of microorganisms occluded in effluent wastewater particles to enhance operation of filtration and disinfection systems, Water Environment Research, 83(4):313325, 2011.
 Dietrich J. P., F. J. Loge, T. R. Ginn, H. Basagaoglu, Inactivation of particleassociated microorganisms in wastewater disinfection: Modeling of ozone and chlorine reactive diffusive transport in polydispersed suspensions, Water Research, 41(10): 21892201, 2007.
 Dietrich, J. P., H. Basagaoglu, F. J. Loge, T. R. Ginn, Preliminary Assessment of Transport Processes Influencing the Penetration of Chlorine Into Wastewater Particles and the Subsequent Inactivation of ParticleAssociated Organisms, Water Research, 37(1):139149, 2003.
 Loge, F. J., R. W. Emerick, T. R. Ginn, and J. L. Darby, Association of coliform bacteria with wastewater particles: Impact of operational parameters of the activated sludge process, Water Research, 36(N1):4148, 2001.
 Emerick, R. W., F. J. Loge, T. R. Ginn, and J. L. Darby. Modeling the Inactivation of particleassociated coliform bacteria, Water Environment Research 72(4):432438, 2000.
Population Dynamics
 Loboschefsky E., G. Benigno, T. Sommer, K. Rose, T. Ginn, A. Massoudieh, F. Loge , Individuallevel and populationlevel historical prey demand of San Francisco Estuary Striped Bass using a bioenergetics model, San Francisco Estuary 10(1),122, 2012.
 Massoudieh, A., Loboschefsky, E., Sommer, T., Ginn, T. R., Rose, K., Loge, F. J., Spatiotemporal modeling of stripedbass egg and larval movement and fate in the San Francisco BayDelta, Ecological Modelling, 222(19), 35133523, 2011.
 Ginn T. R. and F. J. Loge, Dosestructured population dynamics, Mathematical Biosciences, 208(1): 325343, 2007.
 Ginn T. R., F. J. Loge, T. D. Scheibe, Explaining “noise” as environmental variations in population dynamics, Computing in Science and Engineering, 9(2): 4049, 2007.
 Collier T.K., M. R. Arkoosh, L.L. Johnson, T. R. Ginn, F. J. Loge, The influence of chemical contaminants on disease ecology in Columbia River Chinook salmon, Marine Environmental Research, 62: S370S370 Suppl. S, 2006.
 Loge, F. J., M. R. Arkoosh, T. R. Ginn, L. L. Johnson, T. K. Collier, Impact of Environmental Stressors on the Dynamics of Disease Transmission, Environmental Science and Technology, 39 (18): 73297336 Sep. 15 2005.
 Ginn, T. R., F. J. Loge, M. Arkoosh, Population balance modeling of dose in environmental mixtures, Proceedings of the XVth International Conference on Computational Methods in Water Resources (CMWR XV), June 13–17, 2004, Chapel Hill, NC, USA, Volume 1, Edited by C. T. Miller, M. W. Farthing, W. G. Gray, G. F. Pinder, pages 839847.